FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index15_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 23727416 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4960880 | 2.5793865 | 5.2170715 | 1 |
| CCTGG | 4954940 | 2.5639548 | 6.2183833 | 1 |
| GAAGA | 5038420 | 2.5636337 | 5.103162 | 2 |
| CTTCT | 5218540 | 2.5304263 | 5.5064955 | 1 |
| CTGGA | 4766280 | 2.4397957 | 8.681383 | 1 |
| TCCAG | 4688035 | 2.3595812 | 5.7899914 | 2 |
| CTCCT | 4682525 | 2.306262 | 7.4490347 | 1 |
| CTGGG | 4339815 | 2.2838786 | 8.387555 | 1 |
| CAGGA | 4336910 | 2.230694 | 5.4640417 | 1 |
| CTTCA | 4529320 | 2.2068024 | 5.672792 | 1 |
| CCCAG | 4274435 | 2.1852775 | 7.2753873 | 1 |
| CTCCA | 4408680 | 2.1818397 | 8.124372 | 1 |
| CTCTG | 4068595 | 2.0379934 | 6.251815 | 1 |
| CTGGC | 3631130 | 1.8789437 | 5.3492165 | 1 |
| TGGAA | 3686395 | 1.8667138 | 5.1961174 | 2 |
| CTGAA | 3712040 | 1.8482413 | 5.2801185 | 1 |
| CTCAG | 3470910 | 1.746978 | 6.057187 | 1 |
| CTGGT | 3247500 | 1.6543877 | 5.0623007 | 1 |
| CTTGG | 3221390 | 1.6410863 | 5.2735405 | 1 |